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Home » MUFFINS AND CAKES

Apple Cream Cheese Muffins

Published: Oct 31, 2023 · Modified: Nov 8, 2023 by Meymi. This post may contain affiliate links.

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Apple cream cheese muffins with text overlay.
Collage for apple cream cheese muffins with text overlay.

These apple cream cheese muffins are deliciously soft and moist!  There are three layers in these apple muffins.  The muffin batter, cream cheese and streusel topping make a perfect combination.  This recipe is a perfect fall treat.  You can have these muffins at breakfast or as a snack. 

Apple cream cheese muffin that is cut in half and whole muffins on a white surface.

Today’s recipe is adapted from my stawberry cream cheese muffins and apple crumble muffins. 

These apple cream cheese muffins are perfect for fall. Apple muffins get a fresh touch with the addition of cream cheese layer.

Ingredients you’ll need

You can find the exact quantities at the bottom of my post, in the recipe card.

Ingredients to make apple cream cheese muffins.
  • Apples-I prefer using Gala apples. For a tangy flavor you can use Granny Smith.
  • Lemon juice-I mix just a little with apples for flavor.
  • Cinnamon and nutmeg-They go well with apples, they make the perfect fall baking together.
  • Salt-It brings the flavors out but this is an optional ingredient. If you omit salt, you can simply leave it out.
  • Flour-I use all-purpose flour for the batter and the crumbles. 
  • Baking powder-It works as a leavener, makes the muffins rise.
  • Eggs-They create structure.
  • Sugar-I use just enough sugar. These muffins are not overly sweet.  I use granulated sugar in the muffin batter, in the cream cheese filling and in the crumbles. 
  • Butter and milk–Melted butter and milk give moisture and add flavor.
  • Vanilla extract-I use pure vanilla extract in the muffin batter and in the cream cheese mixture.
  • Cream cheese-I use full fat block style cream cheese.

Step by step instructions

First I prepare the crumble by mixing sugar, flour and cinnamon in a small-medium bowl and then adding the melted butter and stirring with a fork.  I set aside the bowl.

Collage that shows the process of making crumbles.

Next I prepare the cream cheese filling.  I combine softened cream cheese, vanilla extract and sugar in a medium bowl by pressing with a spoon and set aside the bowl.  

Collage that shows cream cheese, sugar and vanilla extract in a bowl and after stirring.

Then I peel, core and chop the apples into around 0.25 to 0.5 inch (0,6cm to 1.25 cm) pieces, mix in the lemon juice and set aside the bowl.

Collage that shows peeled and cored apples and lemon juice is poured over the chopped apples.

I mix the flour, cinnamon, nutmeg, baking powder and salt in a large bowl.

Collage that shows stirring flour, cinnamon, nutmeg, baking powder and salt with a whisk.

Next, I place the sugar and eggs into a medium bowl and stir with a whisk until just combined.

Collage that shows stirring eggs and sugar with whisk.

I mix in the milk, melted butter and vanilla extract.

Collage that shows adding milk, melted butter and vanilla extract to the mixture.

Then I pour the wet ingredient mixture into flour mixture and stir with a whisk. You can use a spatula at at the end. I fold the apples with a spatula.

Collage that shows pouring wet ingredients into dry ingredients, stirring and folding the apples.

Keeping 6 tablespoons of the batter aside, I divide the muffin batter into 12 cup muffin pan.  I use almost 2 and ½ tablespoons of batter per cup. Using the back of a spoon, I try to create a hole in the middle.

Collage shows making a hole in the center of batter that is in a muffin tin.

Next, I place 2 teaspoons of cream cheese mixture into the center and slightly press to the filling to let it sit in the hole as much as I can.

I place the muffin batter that I set aside on top of the cream cheese-it makes almost 1 and ½ teaspoons of muffin batter for each- and spread it with the back of a spoon.

Placing cream cheese mixture into the center of the batter, adding batter on top and spreading.

Finally, I sprinkle the crumbles on top. I bake for  22-25 minutes or until the muffins with batter parts look golden brown and the crumbles are lightly brown.

Apple cream cheese muffins before and after baked.

After 10 minutes, using a small spatula, I gently remove the muffins from the pan.  Due to the cream cheese filling, these muffins are fragile.

I let them cool on a wire rack. 

Apple cream cheese muffins on a wire rack.

I hope you enjoy these cream cheese apples so much!

How to store

You can store completely cooled muffins in the fridge in an airtight container for up to 4 days or in the freezer for up to 3 months.

OTHER APPLE RECIPES WITH CRUMBLES YOU MAY ENJOY!

  • Apple Cheesecake Bars
  • Caramel Apple Bars
  • Easy Apple Crumble Recipe
  • Apple Pie Bars Recipe
  • Apple and Blueberry Crumble

I love hearing from you!  If you try this recipe or my other recipes please leave a comment and give a star rating!

Apple cream cheese muffin that is cut in half.

Apple Cream Cheese Muffins

These delicious apple cream cheese muffins are soft and moist! They are perfect for a fall breakfast treat or a snack!
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Course: Dessert
Prep Time: 20 minutes minutes
Cook Time: 22 minutes minutes
Total Time: 42 minutes minutes
Servings: 12 muffins
Calories: 291kcal
Author: Meymi

Ingredients

Crumbles

  • 60 grams (6 tablespoons) all-purpose flour, dip and sweep
  • 60 grams (¼ cup and 1 tablespoon) granulated sugar
  • ½ teaspoon ground cinnamon
  • 42 grams(3 tablespoons) unsalted butter, melted*

Cream Cheese Filling

  • 170 grams (6 oz) cream cheese, full fat, block style, softened
  • 30 grams (2 tablespoons) granulated sugar
  • ½ teaspoon pure vanilla extract

Muffin Batter

  • 235 grams (1 and ⅔ cups) all-purpose flour, dip and sweep
  • 2 and ½ teaspoons baking powder
  • ⅛ teaspoon salt, optional
  • 1 teaspoon ground cinnamon
  • ⅛ teaspoon ground nutmeg
  • 2 large eggs, room temperature
  • 105 grams (½ cup) granulated sugar
  • 120 grams (½ cup) milk, room temperature
  • 115 grams (½ cup) unsalted butter, melted*
  • 1 teaspoon pure vanilla extract
  • 235 grams (2 and ⅓ cups) apples, cored, peeled and chopped into small pieces
  • 1 teaspoon lemon juice
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Instructions

  • Preheat the oven to 375°F(190°C). Line 12 non-stick standard paper liners into a regular size 12 cup-cupcake/muffin pan and set aside.

Crumbles

  • Place the flour, sugar and cinnamon in a small-medium bowl and stir with a fork.  Pour the melted butter and stir until the mixture forms crumbles. If you are working in a hot environment, you can keep the mixture in the fridge to keep the butter cold.

Cream Cheese Filling

  • Put the cream cheese, sugar and vanilla extract in a medium bowl and stir with a spoon until completely combined. Set aside the bowl.

Muffin Batter

  • Put the chopped apples into a small bowl and mix in the lemon juice.
  • Place the flour, cinnamon, nutmeg, baking powder and salt in a large bowl and stir with a whisk.  Set aside.
  • Mix the eggs and sugar in a medium bowl and whisk for almost 20 seconds until combined well.
  • Add the milk, melted butter and vanilla extract and stir with a whisk.
  • Pour the wet mixture over the flour mixture and stir with a whisk. You can continue with a spoon/spatula.
  • Fold the apples with a spoon/spatula.

Assemble

  • Set aside 6 tablespoons of the muffin batter.
  • Divide the muffin batter (almost 2 and ½ tablespoons per cup) into a 12 muffin cup tin.
  • Spread the batter to the sides with a back of a spoon. Try to fill 2 teaspoons of cream cheese mixture into the middle hole you created as much as you can and gently press to the filling.
  • Top the cream cheese mixture with the batter you set aside (½ tablespoon for each muffin) and spread it with the back of a spoon.
  • Sprinkle the crumbles on top.
  • Bake for 22-25 minutes or until the batter part of the muffins look golden brown and the crumbles are lightly brown.
  • Let the muffins cool in the pan for 10 minutes and then gently remove them from the pan with the help of a small spatula or a knife as these muffins are fragile due to the cream cheese. Let them cool on a wire rack.

Notes

*As always, I melt the butter halfway so it cools fast.  Once I remove the halfway melted butter from the stove, I stir it and it easily melts. 
How to store: You can store completely cooled muffins in the fridge in an airtight container for up to 4 days or in the freezer for up to 3 months.
The calorie information above is an estimate that is provided by an online nutrition calculator. 

Nutrition

Calories: 291kcal | Carbohydrates: 40g | Protein: 6g | Fat: 12g | Saturated Fat: 7g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 3g | Trans Fat: 0.4g | Cholesterol: 62mg | Sodium: 206mg | Potassium: 119mg | Fiber: 1g | Sugar: 20g | Vitamin A: 407IU | Vitamin C: 1mg | Calcium: 126mg | Iron: 1mg
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